Key: Blue
= undergraduate, Red = graduate *asterisk indicates students co-advised or advised by other faculty
Hedges,
S. B., S. Kumar*, K. Tamura, and M.
Stoneking. 1992. Human origins and analysis of mitochondrial DNA
sequences. Science 255:737-739.
E-print
Frye, M. S., and S. B.
Hedges. 1995. Monophyly of the order Rodentia inferred from mitochondrial
DNA sequences of the genes for 12S rRNA, 16S rRNA, and tRNA-valine. Mol.
Biol. Evol. 12:168-176.
E-print
Heise*, P. J., H. G.
Dowling, L. R. Maxson, and S. B. Hedges. 1995. Higher-level snake
phylogeny inferred from mitochondrial DNA sequences of 12SrRNA and 16SrRNA
genes. Mol. Biol. Evol. 12:259-265.
E-print
Hay*, J. M., I. Ruvinsky,
S. B. Hedges, and L. R. Maxson. 1995. Phylogenetic relationships of
amphibian families inferred from DNA sequences of mitochondrial 12S and
16S ribosomal RNA genes. Mol. Biol. Evol. 12:928-937.
E-print
Hedges,
S. B., Simmons, M. D., VanDikj, M. A.,
Caspers, G., DeJong, W. W., and C. G. Sibley. 1995. Phylogenetic
relationships of the Hoatzin, an enigmatic South American bird. Proc.
Nat. Acad. Sci. (USA) 92:11662-11665.
E-print
Hedges,
S. B., P. H. Parker, C. G. Sibley, and S.
Kumar. 1996. Continental breakup and the ordinal diversification of birds
and mammals. Nature:381:226-229.
E-print
van Tuinen, M., C. G.
Sibley, and S. B. Hedges. 1998. Phylogeny and biogeography of ratite birds
inferred from DNA sequences of the mitochondrial ribosomal genes. Mol.
Biol. Evol.: 15:370-376.
E-print
Schubart*, C., R. Diesel,
and S. B. Hedges. 1998. Rapid evolution to terrestrial life in Jamaican
crabs. Nature 393:363-365.
E-print
Feller, A. E. and S. B.
Hedges. 1998. Molecular evidence for the early history of living
amphibians. Mol. Phylogenet. Evol. 9:509-516.
E-print
Wang, D. Y.-C., S.
Kumar, and S. B. Hedges. 1999. Divergence time estimates for the early
history of animal phyla and the origin of plants, animals, and fungi. Proc.
Roy. Soc. London B 266:163-171.
E-print
Hedges,
S. B. and L. L. Poling. 1999. A molecular
phylogeny of reptiles. Science 283:998-1001.
E-print
van Tuinen, M., C. G.
Sibley, and S. B. Hedges. 2000. The early history of modern birds inferred
from DNA sequences of nuclear and mitochondrial ribosomal genes. Mol.
Biol. Evol. 17:451-457.
E-print
Vidal,
N., S. G. Kindl, A. Wong, and S. B.
Hedges. 2000. Phylogenetic relationships of xenodontine snakes inferred
from 12S and 16S ribosomal RNA sequences. Mol. Phylogenet. Evol.
14:389-402.
E-print
Tracy, M. R. and S. B.
Hedges. 2000. Evolutionary history of the enolase gene family. Gene
259:129-138.
E-print
van Tuinen, M., and S. B.
Hedges. 2001. Calibration of avian molecular clocks. Mol. Biol.
Evol. 18:206-213. E-print
van Tuinen, M., D. B.
Butvill, J. A. W. Kirsch, and S. B. Hedges. 2001. Convergence and
divergence in the evolution of aquatic birds. Proc. Roy. Soc.
London, B268: 1345-1350.
E-print
Heckman, D. S., D. M.
Geiser, B. R. Eidell, R. L. Stauffer, N. L.
Kardos, and S. B. Hedges. 2001. Molecular evidence for the early
colonization of land by fungi and plants. Science
293:1129-1133.E-print
Pramuk*, J. B., C. A.
Hass, and S. B. Hedges. 2001. Molecular phylogeny and biogeography of West
Indian toads (Anura: Bufonidae). Mol. Phylogenet. Evol.
20:294-301.
E-print
Hedges, S. B., H. Chen,
S. Kumar, D. Y.-C. Wang, A. S. Thompson,
and H. Watanabe.2001.A genomic timescale for the origin of
eukaryotes.BMC Evolutionary
Biology1:4 (10 pages).
E-print
Stauffer, R.L., A. Walker, O.
Ryder, M. Lyons-Weiler, and S. B. Hedges.2001.Human and ape
molecular clocks and constraints on paleontological hypotheses. J. Heredity 92:469-474.E-print
Blair, J. E., K. Ikeo, T.
Gojobori, and S. B. Hedges.2002.The evolutionary
position of nematodes.BMC
Evolutionary Biology 2:7 (7 pages).
E-print
Hedges, S. B. and
P. Shah. 2003.
Comparison of mode estimation methods and application in molecular clock
analysis. BMC Bioinformatics 4:31. E-print.
Hower,
L. M.and S. B. Hedges.2003. Molecular Phylogeny and Biogeography of West Indian Teiid Lizards
of the Genus Ameiva. Caribb.
J. Sci.39:298-306. E-print.
Pisani, D., L. L. Poling, M. Lyons-Weiler, and S. B. Hedges. 2004.
The colonization of land by animals: molecular phylogeny and divergence
times among arthropods. BMC Biology 2:1 (10 pages).
E-print.
Hedges, S. B.,
J. E. Blair, M. L.
Venturi, and J. L. Shoe. 2004. A molecular timescale of eukaryote
evolution and the rise of complex multicellular life. BMC Evol.
Biol. 4:2 (9 pages). E-print.
Battistuzzi, F. B.,
A. Feijão, and S. B. Hedges. 2004.
A genomic timescale of prokaryote evolution: insights into the origin of
methanogenesis, phototrophy, and the colonization of land. BMC Evol.
Biol. 4:44 (14 pages). E-print
Rabosky, D. L., K. P. Aplin, S. C.
Donnellan, and S. B. Hedges. 2004. Molecular phylogeny of blindsnakes (Ramphotyphlops)
from Western Australia and resurrection of Ramphotyphlops bicolor
(Peters, 1857). Australian J. Zool. 52:531-548.
E-print
Blair, J. E., and S. B. Hedges.
2005. Molecular clocks do not support the Cambrian explosion. Mol.
Biol. Evol. 22:387-390.
E-print
Blair, J. E., P. Shah, and S. B.
Hedges. 2005. Evolutionary sequence analysis of complete eukaryote genomes.
BMC Bioinformatics
4:53. E-print
Blair, J. E., and S. B. Hedges. 2005.
Molecular phylogeny and divergence times of deuterostome animals. Mol.
Bio. Evol.
22:2275-2284.
E-print
van Rheede, T., T. Bastiaans, D. N. Boone, S. B.
Hedges, W. W. de Jong, and O. Madsen. 2006. The platypus is in its place: nuclear
genes and indels confirm the sister group relation of monotremes and
therians. Mol. Biol. Evol. 23:587-597.
E-print
Hedges, S. B., and M.
P. Heinicke. 2007. Molecular phylogeny and biogeography of West Indian frogs
of the genus Leptodactylus. Mol. Phylo. Evol.
44:308-314. E-print
Heinicke, M. P., W. E. Duellman, and S. B.
Hedges. 2007. Major Caribbean and Central American frog faunas originated by
ancient oceanic dispersal. Proc. Natl. Acad. Sci. (USA):
104:10092-10097.
E-printSI text and tablesSI
Table 4 SI Figures:
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